FLI Jena - Biomolecular NMR Spectroscopy

Current projects

The systems we are working on include proteins involved in maintenance of the genome and in repairing DNA and oxidative protein damage, papillomaviral oncoproteins, and aggregates of proteins contributing to papillomavirus release and the pathogenesis of Alzheimer's disease. In this context, we are also engaged in developing techniques for solid state NMR, which is a powerful tool for the structural characterisation of biomolecules not amenable to investigation by solution state NMR or X-ray crystallography.

Genome maintenance and repair of molecular damage

Oxygen, although essential for life, is dangerous to cells because it forms reactive oxygen species (ROS) that cause damage to nucleic acids and proteins and one major ageing theory holds, that accumulation of oxidative damage constitutes a major causes of aging and age-related diseases. Furthermore, replication and DNA damage repair are central to genomic stability. Mutations in genes coding for proteins involved in replication and/or DNA damage repair pathways lead to premature ageing (progeroid syndromes), neurodegeneration and frequently cancer. Hence, such mutations cause phenotypes recapitulating features of "normal" ageing, e.g. gray hair, cataracts and increased incidence of cancer. Moreover, certain steps along the pathways repairing oxidative DNA damage require "rescue" proteins, which remove abortive ligation intermediates caused by so-called "dirty strand breaks" and mutations in these proteins may lead to neurodegeration in humans.
Protein damage by ROS frequently leads to non-reversible modification of the polypeptide chain, including chain breaks, which in turn compromises or abolishes protein function. The oxidation of methionine to methionine sulfoxide, however, can be "repaired" by methionine sulfoxide reductases (MSRs).
Our goal is to solve the molecular structures of proteins involved in genome maintenance and damage repair and to characterise their molecular interactions with substrates, in order to provide insight into their respective mechanism of action and, thereby, to assess their role during "normal" ageing.
Collaborations: Z.Q. Wang, H. Pospiech, F. Grosse (FLI)
S. Heinemann (FSU Jena)
W. Meyer-Klaucke (DESY Hamburg)
Repair oxidative damage

The oncoproteins E6 and E7 of human papilloma viruses (HPV)

HPV cause several human diseases ranging from benign manifestations to debilitating malignancies. The HPV oncoproteins E6 and E7 are involved in the pathogenesis and maintenance of human cervical cancers, which typically develop decades after initial infection.
Both oncoproteins excert their malicious activity by interacting with cellular key regulator proteins, thereby confounding or abrogating the delicate orchestration of the cell cycle, apoptosis, cytoskeletal organisation and cell polarity.
We aim at understanding the molecular properties of the HPV oncoproteins and their interaction with cellular proteins at the structural level, which may eventually contribute to developing agents specifically intercepting such deleterious interactions.
Collaborations: A. Ploubidou, H. Morrison, F. Grosse (FLI)
M. Dürst (FSU Jena)
W. Meyer-Klaucke (DESY Hamburg)
Oncoprotein

Structural analysis of amyloidogenic systems

Tissue deposits of amyloid aggregates are the hallmark of a diverse group of serious human diseases, including Alzheimer's disease, Creutzfeldt-Jakob disease and type II diabetes. Increasing evidence suggests that such aggregates are in these cases the main contributors to pathogenicity. The lack of precise structural knowledge about these different forms of amyloid aggregates severely limits our understanding of the structural basis of amyloid diseases and hampers the rational search for potential therapeutic agents.
In addition, we also study a papillomaviral protein involved in the release of virus progeny from the upper layers of infected epithelia. This protein interacts with and compromises the dynamics and stability of the cytokeratin network. This is thought to "weaken" the cell and to promote the release of virus particles.The cytokeratin interaction induces rearrangement of the viral polypeptide leading to the formation of intracellular amyloid-like fibres.
The analysis of the molecular structure of these amyloidogenic systems is carried out using solution state and solid state NMR spectroscopy.
Collaborations: M. Fändrich (FLI, now MPG research unit, Halle)
J. Doorbar (MRC, Mill Hill, London, UK)

Prefibrillar Aggregate 1

Prefibrillar Aggregate 2

Development of solid state NMR Methods

Magic angle spinning solid state NMR (MAS NMR) is emerging as a tool for the structural characterisation of biomolecules. It holds promise for systems, which are, e.g. due to their aggregation behaviour, difficult to study by solution state NMR or by X-ray crystallography. We aim to explore and exploit the potential of this technique for the structural study of e.g. amyloidogenic systems (see above).
Mixing schemes leading to homo- and heteronuclear dipolar coupling mediated coherence transfers form an important building block of MAS NMR pulse sequences. Hence, methods that facilitate the design of efficient dipolar recoupling schemes for applications at high MAS frequencies are of great interest and we are examining different approaches for generating homo- and heteronuclear chemical shift correlation data in rotating solids. This includes the development of acquisition time saving approaches for the simultaneous generation of different MAS chemical shift correlation data sets using multiple receivers.
Collaborations: C. Glaubitz (highest field solid state NMR facility, Univ. Frankfurt)
Solide State NMR

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Last update: Wednesday, 03-Nov-2010 15:26:43 CET